species:   Rhsol
pid:       PID0483
parent:    Rhi-milR-118
paralog:   
locus:     KB317811.1:16418-16530
matures:   ['UCAGGAAGCAUGGAUUGGGG', 'CCAGAUUGUUUCCCAGGAC']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317811.1:16418-16530

4 out of bounds
24 alignments
23 proper strand
22 stranded perfect matches

                  ************************                                                ***********************
GCAGUGUUUGCAAAGAUUGGUUCAGGAAGCAUGGAUUGGGGGGCCAGUGGGAUGUCCACAUGGUCAGCACAUUGUGACAGGGUGUCUGGUUCACCAGAUUGUUUCCCAGGACA
(((.....)))........((((.(((((((....((((.(((((((.....((((.(((..((....))..)))))))......))))))).))))..)))))))..)))).
---------------------UCAGGAAGCAUGGAUUGGGG------------------------------------------------------------------------ l=20 a=0 c
---------------------------------------------------------------------------------------------CCAGAUUGUUUCCCAGGAC- l=19 a=0 c*
--------------------UUCAGGAAGCAUGGAUUGGGGG----------------------------------------------------------------------- l=22 a=4 ma
--------------------------------------------------------------------------------------------ACCAGAUUGUUUCCCAGGACA l=21 a=0 ma*

----UGUUUGCAAAGAUUGGUUCAGG--------------------------------------------------------------------------------------- l=22 a=1 
-----------AAAGAUUGGUUCAGGAAGCAUG-------------------------------------------------------------------------------- l=22 a=2 
--------------------UUCAGGAAGCAUGGAUUGGG------------------------------------------------------------------------- l=20 a=2 
--------------------UUCAGGAAGCAUGGAUUGGGG------------------------------------------------------------------------ l=21 a=3 
--------------------UUCAGGAAGCAUGGAUUGGGGG----------------------------------------------------------------------- l=22 a=4 (ma)
--------------------UUCAGGAAGCAUGGAUUGGGGGG---------------------------------------------------------------------- l=23 a=1 
--------------------UUCAGGAAGCAUGGAUUGGGGGGC--------------------------------------------------------------------- l=24 a=1 
---------------------UCAGGAAGCAUGGAUUGGGGG----------------------------------------------------------------------- l=21 a=1 
---------------------UCAGGAAGCAUGGAUUGGGGGG---------------------------------------------------------------------- l=22 a=1 
---------------------UCAGGAAGCAUGGAUUGGGGGGCC-------------------------------------------------------------------- l=24 a=1 
----------------------CAGGAAGCAUGGAUUGGGGGGCC-------------------------------------------------------------------- l=23 a=1 
--------------------------AAGCAUGGAUUGGGGGGCCAG------------------------------------------------------------------ l=21 a=1 
---------------------------AGCgUGGAUUGGGGGG---------------------------------------------------------------------- l=16 a=1 
-----------------------------CAUGGAUUGGGGGGCCAGUGGGAU------------------------------------------------------------ l=24 a=1 
--------------------------------------------------------------------------------------UGGUUCACCAGAUUGUUUCCCAGG--- l=24 a=2 

mb-01111
ax-1001011
ku-01
ss-111111101100
fn-111
